Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
COL4A5P29400 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL4A5P29400 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL4A5P29400 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
COL4A5P29400 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 EEF1DP5-201ENST00000431410 772 ntBASIC17.01■□□□□ 0.31
COL4A5P29400 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL4A5P29400 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL4A5P29400 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.01■□□□□ 0.31
COL4A5P29400 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 MT3-202ENST00000561640 514 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 AC091304.3-201ENST00000566500 716 ntBASIC17.01■□□□□ 0.31
COL4A5P29400 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.01■□□□□ 0.31
COL4A5P29400 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.01■□□□□ 0.31
COL4A5P29400 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL4A5P29400 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17■□□□□ 0.31
COL4A5P29400 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17■□□□□ 0.31
COL4A5P29400 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 SHMT1P1-201ENST00000419974 1312 ntBASIC17■□□□□ 0.31
COL4A5P29400 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17■□□□□ 0.31
COL4A5P29400 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL4A5P29400 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 DUT-207ENST00000559416 635 ntTSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 CR392039.1-201ENST00000623217 204 ntBASIC17■□□□□ 0.31
COL4A5P29400 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
COL4A5P29400 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL4A5P29400 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 PAUPAR-201ENST00000630360 2965 ntBASIC16.99■□□□□ 0.31
COL4A5P29400 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 ABCD1P4-201ENST00000399687 604 ntBASIC16.99■□□□□ 0.31
COL4A5P29400 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC16.99■□□□□ 0.31
COL4A5P29400 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC16.99■□□□□ 0.31
COL4A5P29400 AC078814.4-201ENST00000546650 327 ntBASIC16.99■□□□□ 0.31
COL4A5P29400 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL4A5P29400 AC080013.5-201ENST00000607044 679 ntBASIC16.99■□□□□ 0.31
COL4A5P29400 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
COL4A5P29400 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms