Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC005586.2-201ENST00000563946 837 ntBASIC17.07■□□□□ 0.32
GABPAQ06546 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC138894.2-201ENST00000602838 371 ntBASIC17.07■□□□□ 0.32
GABPAQ06546 AC104506.1-201ENST00000609247 429 ntBASIC17.07■□□□□ 0.32
GABPAQ06546 AC009560.1-201ENST00000620208 434 ntBASIC17.07■□□□□ 0.32
GABPAQ06546 AL353726.2-201ENST00000623259 884 ntBASIC17.07■□□□□ 0.32
GABPAQ06546 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.07■□□□□ 0.32
GABPAQ06546 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.07■□□□□ 0.32
GABPAQ06546 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.07■□□□□ 0.32
GABPAQ06546 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
GABPAQ06546 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
GABPAQ06546 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
GABPAQ06546 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.07■□□□□ 0.32
GABPAQ06546 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
GABPAQ06546 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
GABPAQ06546 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
GABPAQ06546 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.07■□□□□ 0.32
GABPAQ06546 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
GABPAQ06546 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC17.06■□□□□ 0.32
GABPAQ06546 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.06■□□□□ 0.32
GABPAQ06546 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 DUX4L50-201ENST00000455245 715 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 RN7SL530P-201ENST00000485097 298 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.06■□□□□ 0.32
GABPAQ06546 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.06■□□□□ 0.32
GABPAQ06546 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.06■□□□□ 0.32
GABPAQ06546 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 SIGLEC18P-201ENST00000602271 909 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 SPCS2P2-201ENST00000603270 608 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 MIR6074-201ENST00000612054 107 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 AL591471.1-201ENST00000621855 229 ntBASIC17.06■□□□□ 0.32
GABPAQ06546 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
GABPAQ06546 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
GABPAQ06546 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
GABPAQ06546 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.06■□□□□ 0.32
GABPAQ06546 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 AC046158.3-201ENST00000624947 2558 ntBASIC17.05■□□□□ 0.32
GABPAQ06546 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 RPS9P1-201ENST00000419943 583 ntBASIC17.05■□□□□ 0.32
GABPAQ06546 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.05■□□□□ 0.32
GABPAQ06546 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.05■□□□□ 0.32
GABPAQ06546 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 AC069218.1-201ENST00000435269 762 ntBASIC17.05■□□□□ 0.32
GABPAQ06546 FGFR3P1-201ENST00000449999 601 ntBASIC17.05■□□□□ 0.32
GABPAQ06546 DUTP3-201ENST00000450025 415 ntBASIC17.05■□□□□ 0.32
GABPAQ06546 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.05■□□□□ 0.32
GABPAQ06546 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
GABPAQ06546 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
GABPAQ06546 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
GABPAQ06546 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms