Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC8.79□□□□□ -1
APOBP04114 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
APOBP04114 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC8.79□□□□□ -1
APOBP04114 MIR181D-201ENST00000384853 137 ntBASIC8.79□□□□□ -1
APOBP04114 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 AC006987.1-201ENST00000413610 527 ntBASIC8.79□□□□□ -1
APOBP04114 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 AC018529.2-202ENST00000611482 3087 ntBASIC8.79□□□□□ -1
APOBP04114 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC8.79□□□□□ -1
APOBP04114 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 RNA5SP491-201ENST00000362936 118 ntBASIC8.79□□□□□ -1
APOBP04114 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 CCND3P1-201ENST00000438347 580 ntBASIC8.79□□□□□ -1
APOBP04114 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC8.79□□□□□ -1
APOBP04114 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 MIEF1-215ENST00000637854 213 ntBASIC8.79□□□□□ -1
APOBP04114 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 AL031590.1-202ENST00000641466 1737 ntBASIC8.79□□□□□ -1
APOBP04114 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC8.79□□□□□ -1
APOBP04114 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 TBC1D27-202ENST00000424239 1573 ntBASIC8.79□□□□□ -1
APOBP04114 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
APOBP04114 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC8.79□□□□□ -1
APOBP04114 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC8.79□□□□□ -1
APOBP04114 FAM86JP-202ENST00000484500 988 ntBASIC8.79□□□□□ -1
APOBP04114 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 OR52V1P-201ENST00000515557 898 ntBASIC8.79□□□□□ -1
APOBP04114 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC8.79□□□□□ -1
APOBP04114 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC8.79□□□□□ -1
APOBP04114 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC8.79□□□□□ -1
APOBP04114 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC8.78□□□□□ -1
APOBP04114 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 CDKN2A-AS1-201ENST00000441769 823 ntBASIC8.78□□□□□ -1
APOBP04114 RN7SL340P-201ENST00000470792 296 ntBASIC8.78□□□□□ -1
APOBP04114 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC8.78□□□□□ -1
APOBP04114 ACTBP9-201ENST00000587663 1099 ntBASIC8.78□□□□□ -1
APOBP04114 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
APOBP04114 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
APOBP04114 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC8.78□□□□□ -1
APOBP04114 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 AC015818.3-201ENST00000583797 589 ntBASIC8.78□□□□□ -1
APOBP04114 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC8.78□□□□□ -1
APOBP04114 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC8.78□□□□□ -1
APOBP04114 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
APOBP04114 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC8.78□□□□□ -1
APOBP04114 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
APOBP04114 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC8.78□□□□□ -1
APOBP04114 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 UGT1A12P-201ENST00000447084 853 ntBASIC8.78□□□□□ -1
APOBP04114 ISL1-203ENST00000511384 981 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC8.78□□□□□ -1
APOBP04114 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC8.78□□□□□ -1
APOBP04114 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC8.78□□□□□ -1
APOBP04114 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms