Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DUX4L46-201ENST00000566845 751 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AL096828.3-201ENST00000615354 462 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 AC107918.4-201ENST00000641966 3141 ntBASIC14.64□□□□□ -0.07
TRIM39Q9HCM9 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AL035414.1-201ENST00000451327 857 ntBASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC108725.1-201ENST00000495472 409 ntBASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC104982.3-201ENST00000581995 514 ntBASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC027601.3-201ENST00000622907 509 ntBASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRIM39Q9HCM9 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
TRIM39Q9HCM9 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms