Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC28BQ9BUN5 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 AC019294.4-201ENST00000561777 2905 ntBASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 VDAC1P7-201ENST00000462417 847 ntBASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RPL13AP25-201ENST00000484130 612 ntBASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RARRES2P5-201ENST00000564013 466 ntBASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC28BQ9BUN5 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 AC211486.1-202ENST00000416371 468 ntBASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 AC211476.1-201ENST00000503899 468 ntBASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 AC138761.1-201ENST00000584393 385 ntBASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CCDC28BQ9BUN5 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms