Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 REXO1L4P-201ENST00000605109 1937 ntBASIC13.2□□□□□ -0.3
SCN1BQ07699 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
SCN1BQ07699 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.2□□□□□ -0.3
SCN1BQ07699 SERBP1P3-201ENST00000459980 809 ntBASIC13.2□□□□□ -0.3
SCN1BQ07699 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.2□□□□□ -0.3
SCN1BQ07699 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.2□□□□□ -0.3
SCN1BQ07699 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.2□□□□□ -0.3
SCN1BQ07699 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.2□□□□□ -0.3
SCN1BQ07699 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.2□□□□□ -0.3
SCN1BQ07699 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 AGGF1P1-201ENST00000509500 2073 ntBASIC13.2□□□□□ -0.3
SCN1BQ07699 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SCN1BQ07699 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SCN1BQ07699 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.2□□□□□ -0.3
SCN1BQ07699 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.19□□□□□ -0.3
SCN1BQ07699 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SCN1BQ07699 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SCN1BQ07699 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 MIR1233-2-201ENST00000408138 82 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 MIR1233-1-201ENST00000408722 82 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SCN1BQ07699 DNAJB3-202ENST00000449667 1266 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SCN1BQ07699 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 AC109322.1-201ENST00000524499 1264 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 AC069262.1-201ENST00000539058 672 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.19□□□□□ -0.3
SCN1BQ07699 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.19□□□□□ -0.3
SCN1BQ07699 AC027612.4-201ENST00000605371 583 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 AC079781.4-201ENST00000641908 219 ntBASIC13.19□□□□□ -0.3
SCN1BQ07699 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SCN1BQ07699 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SCN1BQ07699 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.19□□□□□ -0.3
SCN1BQ07699 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SCN1BQ07699 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SCN1BQ07699 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SCN1BQ07699 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.18□□□□□ -0.3
SCN1BQ07699 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SCN1BQ07699 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SCN1BQ07699 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SCN1BQ07699 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
SCN1BQ07699 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SCN1BQ07699 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SCN1BQ07699 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SCN1BQ07699 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SCN1BQ07699 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SCN1BQ07699 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms