Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 AP000356.3-201ENST00000382243 753 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 MIR557-201ENST00000385239 98 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 AL627422.1-201ENST00000434104 580 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 TMCO5B-205ENST00000530020 894 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC12.65□□□□□ -0.38
ABCA4P78363 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA4P78363 AC148477.9-201ENST00000623974 539 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 AC005618.3-201ENST00000624928 458 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA4P78363 PPT1-215ENST00000641471 2368 ntBASIC12.65□□□□□ -0.38
ABCA4P78363 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
ABCA4P78363 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.65□□□□□ -0.38
ABCA4P78363 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ABCA4P78363 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ABCA4P78363 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA4P78363 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA4P78363 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
ABCA4P78363 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.65□□□□□ -0.39
ABCA4P78363 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 RN7SKP230-201ENST00000365642 335 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 AL627231.1-201ENST00000394467 1125 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 PUDPP3-201ENST00000445368 636 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 CHCHD2P9-201ENST00000461726 456 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.64□□□□□ -0.39
ABCA4P78363 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.64□□□□□ -0.39
ABCA4P78363 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.64□□□□□ -0.39
ABCA4P78363 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 AC018629.1-201ENST00000623381 1736 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.64□□□□□ -0.39
ABCA4P78363 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 LINC00528-201ENST00000600723 2160 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
ABCA4P78363 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.64□□□□□ -0.39
ABCA4P78363 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ABCA4P78363 DUTP3-201ENST00000450025 415 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC12.64□□□□□ -0.39
ABCA4P78363 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 MIR3677-201ENST00000578964 60 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 MIR3188-201ENST00000583494 85 ntBASIC12.64□□□□□ -0.39
ABCA4P78363 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC12.64□□□□□ -0.39
ABCA4P78363 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms