Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.33■□□□□ 0.05
CDH6P55285 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.33■□□□□ 0.05
CDH6P55285 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CDH6P55285 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CDH6P55285 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CDH6P55285 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDH6P55285 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDH6P55285 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CDH6P55285 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
CDH6P55285 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.33■□□□□ 0.05
CDH6P55285 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CDH6P55285 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 CD8B2-202ENST00000417670 633 ntBASIC15.33■□□□□ 0.04
CDH6P55285 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.33■□□□□ 0.04
CDH6P55285 CNN2P8-201ENST00000421872 913 ntBASIC15.33■□□□□ 0.04
CDH6P55285 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.33■□□□□ 0.04
CDH6P55285 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CDH6P55285 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CDH6P55285 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.33■□□□□ 0.04
CDH6P55285 AC002472.3-201ENST00000640124 621 ntBASIC15.33■□□□□ 0.04
CDH6P55285 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CDH6P55285 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 KHSRPP1-201ENST00000427983 1768 ntBASIC15.33■□□□□ 0.04
CDH6P55285 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CDH6P55285 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
CDH6P55285 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH6P55285 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH6P55285 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH6P55285 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH6P55285 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AC005034.1-201ENST00000426657 489 ntBASIC15.32■□□□□ 0.04
CDH6P55285 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 MIR4683-201ENST00000579659 81 ntBASIC15.32■□□□□ 0.04
CDH6P55285 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 MIR6074-201ENST00000612054 107 ntBASIC15.32■□□□□ 0.04
CDH6P55285 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AC063926.2-201ENST00000623766 1308 ntBASIC15.32■□□□□ 0.04
CDH6P55285 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AC011498.7-201ENST00000624986 2027 ntBASIC15.32■□□□□ 0.04
CDH6P55285 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.32■□□□□ 0.04
CDH6P55285 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CDH6P55285 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms