Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 MYCLP2-201ENST00000449268 967 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 GALT-202ENST00000450095 1280 ntTSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 RN7SL752P-201ENST00000463779 287 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 AC011495.1-201ENST00000498085 584 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AC123567.1-201ENST00000548294 1261 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 AC011474.4-201ENST00000623523 2076 ntBASIC11.29□□□□□ -0.6
HLA-DMBP28068 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DMBP28068 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DMBP28068 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AC089987.1-201ENST00000551654 2209 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AC244107.1-201ENST00000442033 332 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RRP7BP-205ENST00000566851 833 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AC093726.1-201ENST00000608064 963 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 LRRC59-203ENST00000576448 1531 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms