Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.3■□□□□ 0.2
TPM1P09493 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.3■□□□□ 0.2
TPM1P09493 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 RPSAP43-201ENST00000402237 625 ntBASIC16.3■□□□□ 0.2
TPM1P09493 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.3■□□□□ 0.2
TPM1P09493 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 BX842568.4-201ENST00000421222 227 ntBASIC16.3■□□□□ 0.2
TPM1P09493 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 AC114501.2-201ENST00000439631 535 ntBASIC16.3■□□□□ 0.2
TPM1P09493 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 KLF2P3-201ENST00000451977 1087 ntBASIC16.3■□□□□ 0.2
TPM1P09493 RPL13AP25-201ENST00000484130 612 ntBASIC16.3■□□□□ 0.2
TPM1P09493 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.3■□□□□ 0.2
TPM1P09493 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.3■□□□□ 0.2
TPM1P09493 SNHG9-202ENST00000564014 471 ntBASIC16.3■□□□□ 0.2
TPM1P09493 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TPM1P09493 AC092364.2-202ENST00000597012 1073 ntBASIC16.3■□□□□ 0.2
TPM1P09493 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
TPM1P09493 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 RN7SL832P-201ENST00000607781 1756 ntBASIC16.3■□□□□ 0.2
TPM1P09493 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TPM1P09493 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 AC011840.2-201ENST00000563063 1520 ntBASIC16.29■□□□□ 0.2
TPM1P09493 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 MAPT-IT1-201ENST00000624111 3016 ntBASIC16.29■□□□□ 0.2
TPM1P09493 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TPM1P09493 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.29■□□□□ 0.2
TPM1P09493 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC16.29■□□□□ 0.2
TPM1P09493 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.29■□□□□ 0.2
TPM1P09493 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TPM1P09493 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.29■□□□□ 0.2
TPM1P09493 MYADML-201ENST00000474610 2147 ntBASIC16.29■□□□□ 0.2
TPM1P09493 HLA-J-203ENST00000494367 1087 ntBASIC16.29■□□□□ 0.2
TPM1P09493 AC026410.3-201ENST00000514280 936 ntBASIC16.29■□□□□ 0.2
TPM1P09493 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.29■□□□□ 0.2
TPM1P09493 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TPM1P09493 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.29■□□□□ 0.2
TPM1P09493 AC093813.1-201ENST00000605066 256 ntBASIC16.29■□□□□ 0.2
TPM1P09493 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
TPM1P09493 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 BX539320.1-201ENST00000623759 877 ntBASIC16.29■□□□□ 0.2
TPM1P09493 Z92544.3-201ENST00000624747 417 ntBASIC16.29■□□□□ 0.2
TPM1P09493 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TPM1P09493 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TPM1P09493 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TPM1P09493 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM1P09493 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TPM1P09493 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 AC012617.1-204ENST00000586340 2305 ntBASIC16.28■□□□□ 0.2
TPM1P09493 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TPM1P09493 AL139400.1-201ENST00000366220 510 ntBASIC16.28■□□□□ 0.2
TPM1P09493 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM1P09493 AC107890.1-201ENST00000422478 521 ntBASIC16.28■□□□□ 0.2
TPM1P09493 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.28■□□□□ 0.2
TPM1P09493 AC007969.1-201ENST00000433675 447 ntBASIC16.28■□□□□ 0.2
TPM1P09493 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms