Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 NWD1-206ENST00000552788 6964 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 TFAMP1-201ENST00000412727 736 ntBASIC11.9□□□□□ -0.5
HMGB3O15347 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.9□□□□□ -0.5
HMGB3O15347 FAM210CP-201ENST00000445714 574 ntBASIC11.9□□□□□ -0.5
HMGB3O15347 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.9□□□□□ -0.5
HMGB3O15347 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 PENK-208ENST00000523051 772 ntTSL 5 BASIC11.9□□□□□ -0.5
HMGB3O15347 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 POC1B-GALNT4-202ENST00000548729 5436 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HMGB3O15347 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HMGB3O15347 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC11.9□□□□□ -0.51
HMGB3O15347 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.51
HMGB3O15347 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.51
HMGB3O15347 UNC45B-202ENST00000394570 5638 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HMGB3O15347 DCLK3-201ENST00000416516 5344 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
HMGB3O15347 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 AC083964.2-201ENST00000623988 2396 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 GRIK3-201ENST00000373091 9101 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HMGB3O15347 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HMGB3O15347 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
HMGB3O15347 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 AL031284.1-201ENST00000419297 478 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 TARDBPP1-201ENST00000442013 1203 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 KRT18P2-201ENST00000447938 1258 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC11.89□□□□□ -0.51
HMGB3O15347 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 UBL5-208ENST00000593087 320 ntTSL 3 BASIC11.89□□□□□ -0.51
HMGB3O15347 AC025181.2-201ENST00000606994 802 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 AC064836.3-201ENST00000607928 673 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 AL773604.1-201ENST00000617417 272 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC11.89□□□□□ -0.51
HMGB3O15347 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC11.89□□□□□ -0.51
HMGB3O15347 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 AC111170.3-201ENST00000624282 2464 ntBASIC11.89□□□□□ -0.51
HMGB3O15347 SLIT2-201ENST00000273739 5132 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC11.89□□□□□ -0.51
HMGB3O15347 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 AP5S1-205ENST00000615891 5362 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 AR-201ENST00000374690 10652 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HMGB3O15347 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
HMGB3O15347 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms