Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 MYADML-201ENST00000474610 2147 ntBASIC10.81□□□□□ -0.68
SMKR1H3BMG3 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
SMKR1H3BMG3 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 AC005014.1-201ENST00000432006 2976 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 PCDHA6-201ENST00000378126 3267 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 GATB-205ENST00000508611 605 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ALG1L8P-201ENST00000533887 760 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 AC145285.3-201ENST00000564603 959 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 RN7SL510P-201ENST00000581311 263 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 AC104692.2-201ENST00000603054 253 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 MIR6069-201ENST00000620069 79 ntBASIC10.8□□□□□ -0.68
SMKR1H3BMG3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 TP73-213ENST00000604479 1623 ntTSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC10.8□□□□□ -0.68
SMKR1H3BMG3 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC10.79□□□□□ -0.68
SMKR1H3BMG3 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms