Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 IRS3P-201ENST00000223076 1006 ntBASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 C17orf82-201ENST00000623772 1530 ntBASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.44■□□□□ 0.38
NOTCH3Q9UM47 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
NOTCH3Q9UM47 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC17.42■□□□□ 0.38
NOTCH3Q9UM47 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 AC090192.1-201ENST00000517740 490 ntBASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NOTCH3Q9UM47 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NOTCH3Q9UM47 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NOTCH3Q9UM47 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
NOTCH3Q9UM47 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 AC027682.1-201ENST00000562846 899 ntBASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 AC099791.2-201ENST00000605725 427 ntBASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
NOTCH3Q9UM47 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NOTCH3Q9UM47 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NOTCH3Q9UM47 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NOTCH3Q9UM47 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.37■□□□□ 0.37
NOTCH3Q9UM47 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NOTCH3Q9UM47 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms