Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
UPF3AQ9H1J1 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
UPF3AQ9H1J1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
UPF3AQ9H1J1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
UPF3AQ9H1J1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
UPF3AQ9H1J1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.54■■□□□ 1.68
UPF3AQ9H1J1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.54■■□□□ 1.68
UPF3AQ9H1J1 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.54■■□□□ 1.68
UPF3AQ9H1J1 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
UPF3AQ9H1J1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.52■■□□□ 1.68
UPF3AQ9H1J1 DUSP8P4-201ENST00000399538 1761 ntBASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 AL121749.1-202ENST00000609313 2153 ntBASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.51■■□□□ 1.67
UPF3AQ9H1J1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 AL161729.1-201ENST00000604104 1402 ntBASIC25.5■■□□□ 1.67
UPF3AQ9H1J1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
UPF3AQ9H1J1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
UPF3AQ9H1J1 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.48■■□□□ 1.67
UPF3AQ9H1J1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.48■■□□□ 1.67
UPF3AQ9H1J1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
UPF3AQ9H1J1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.48■■□□□ 1.67
UPF3AQ9H1J1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
UPF3AQ9H1J1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
UPF3AQ9H1J1 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
UPF3AQ9H1J1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.45■■□□□ 1.66
UPF3AQ9H1J1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
UPF3AQ9H1J1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.45■■□□□ 1.66
UPF3AQ9H1J1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
UPF3AQ9H1J1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.45■■□□□ 1.66
UPF3AQ9H1J1 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
UPF3AQ9H1J1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
UPF3AQ9H1J1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.43■■□□□ 1.66
UPF3AQ9H1J1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
UPF3AQ9H1J1 AC034268.1-201ENST00000441047 882 ntBASIC25.43■■□□□ 1.66
UPF3AQ9H1J1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.43■■□□□ 1.66
UPF3AQ9H1J1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms