Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.43■■□□□ 1.02
COL21A1Q96P44 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.43■■□□□ 1.02
COL21A1Q96P44 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL21A1Q96P44 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.43■■□□□ 1.02
COL21A1Q96P44 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL21A1Q96P44 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL21A1Q96P44 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL21A1Q96P44 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL21A1Q96P44 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL21A1Q96P44 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL21A1Q96P44 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.42■■□□□ 1.02
COL21A1Q96P44 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.42■■□□□ 1.02
COL21A1Q96P44 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.41■■□□□ 1.02
COL21A1Q96P44 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL21A1Q96P44 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.41■■□□□ 1.02
COL21A1Q96P44 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
COL21A1Q96P44 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
COL21A1Q96P44 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL21A1Q96P44 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
COL21A1Q96P44 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
COL21A1Q96P44 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL21A1Q96P44 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL21A1Q96P44 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL21A1Q96P44 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL21A1Q96P44 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
COL21A1Q96P44 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
COL21A1Q96P44 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL21A1Q96P44 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL21A1Q96P44 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL21A1Q96P44 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL21A1Q96P44 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL21A1Q96P44 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.38■■□□□ 1.01
COL21A1Q96P44 AC009299.2-201ENST00000482477 511 ntBASIC21.38■■□□□ 1.01
COL21A1Q96P44 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
COL21A1Q96P44 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.38■■□□□ 1.01
COL21A1Q96P44 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.38■■□□□ 1.01
COL21A1Q96P44 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL21A1Q96P44 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.37■■□□□ 1.01
COL21A1Q96P44 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 AC137630.3-201ENST00000607245 391 ntBASIC21.37■■□□□ 1.01
COL21A1Q96P44 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL21A1Q96P44 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL21A1Q96P44 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.36■■□□□ 1.01
COL21A1Q96P44 BX664725.1-201ENST00000438252 379 ntBASIC21.36■■□□□ 1.01
COL21A1Q96P44 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.36■■□□□ 1.01
COL21A1Q96P44 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.36■■□□□ 1.01
COL21A1Q96P44 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL21A1Q96P44 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.36■■□□□ 1.01
COL21A1Q96P44 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL21A1Q96P44 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL21A1Q96P44 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL21A1Q96P44 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL21A1Q96P44 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL21A1Q96P44 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
COL21A1Q96P44 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.35■■□□□ 1.01
COL21A1Q96P44 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL21A1Q96P44 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.35■■□□□ 1.01
COL21A1Q96P44 AF131216.4-201ENST00000638924 1588 ntBASIC21.35■■□□□ 1.01
COL21A1Q96P44 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL21A1Q96P44 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL21A1Q96P44 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL21A1Q96P44 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.34■■□□□ 1.01
COL21A1Q96P44 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL21A1Q96P44 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL21A1Q96P44 Z92544.1-202ENST00000571933 1220 ntBASIC21.34■■□□□ 1.01
COL21A1Q96P44 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL21A1Q96P44 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL21A1Q96P44 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL21A1Q96P44 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL21A1Q96P44 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.33■■□□□ 1.01
COL21A1Q96P44 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL21A1Q96P44 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL21A1Q96P44 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.33■■□□□ 1.01
COL21A1Q96P44 AL035685.1-201ENST00000636663 812 ntBASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms