Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
PTCHD1Q96NR3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 LINC00543-201ENST00000567234 1845 ntBASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD1Q96NR3 AC141586.4-201ENST00000624558 1573 ntBASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 MIR3621-201ENST00000580529 85 ntBASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD1Q96NR3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD1Q96NR3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 ALDH1A3-203ENST00000557963 1670 ntBASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.42■■□□□ 1.02
PTCHD1Q96NR3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD1Q96NR3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD1Q96NR3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTCHD1Q96NR3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PTCHD1Q96NR3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTCHD1Q96NR3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PTCHD1Q96NR3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD1Q96NR3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 AC008406.3-201ENST00000620001 1374 ntBASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PTCHD1Q96NR3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD1Q96NR3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms