Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CMTM3Q96MX0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CMTM3Q96MX0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CMTM3Q96MX0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 RPS2P35-201ENST00000443417 897 ntBASIC19.61■□□□□ 0.73
CMTM3Q96MX0 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 AL024507.2-201ENST00000606070 2574 ntBASIC19.61■□□□□ 0.73
CMTM3Q96MX0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CMTM3Q96MX0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CMTM3Q96MX0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 AC007375.3-201ENST00000600936 2314 ntBASIC19.59■□□□□ 0.73
CMTM3Q96MX0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CMTM3Q96MX0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CMTM3Q96MX0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CMTM3Q96MX0 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CMTM3Q96MX0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CMTM3Q96MX0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CMTM3Q96MX0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CMTM3Q96MX0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.57■□□□□ 0.72
CMTM3Q96MX0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CMTM3Q96MX0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 RP9P-202ENST00000450133 1212 ntBASIC19.55■□□□□ 0.72
CMTM3Q96MX0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CMTM3Q96MX0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CMTM3Q96MX0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms