Protein–RNA interactions for Protein: Q6NX49

ZNF544, Zinc finger protein 544, humanhuman

Predictions only

Length 715 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544Q6NX49 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF544Q6NX49 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 PVT1_1.1-201ENST00000615125 194 ntBASIC20.71■□□□□ 0.91
ZNF544Q6NX49 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF544Q6NX49 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
ZNF544Q6NX49 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF544Q6NX49 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 AC103834.1-201ENST00000520383 144 ntBASIC20.69■□□□□ 0.9
ZNF544Q6NX49 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF544Q6NX49 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 AL451085.2-201ENST00000605085 799 ntBASIC20.68■□□□□ 0.9
ZNF544Q6NX49 AL035685.1-201ENST00000636663 812 ntBASIC20.68■□□□□ 0.9
ZNF544Q6NX49 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF544Q6NX49 LINC00565-201ENST00000562710 2331 ntBASIC20.67■□□□□ 0.9
ZNF544Q6NX49 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF544Q6NX49 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 MIR6089-201ENST00000616698 64 ntBASIC20.66■□□□□ 0.9
ZNF544Q6NX49 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF544Q6NX49 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 LONRF2P2-201ENST00000439212 571 ntBASIC20.65■□□□□ 0.9
ZNF544Q6NX49 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF544Q6NX49 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF544Q6NX49 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF544Q6NX49 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF544Q6NX49 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ZNF544Q6NX49 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms