Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A1P20908 AC006455.2-201ENST00000429931 906 ntBASIC22.17■■□□□ 1.14
COL5A1P20908 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC22.17■■□□□ 1.14
COL5A1P20908 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
COL5A1P20908 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL5A1P20908 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
COL5A1P20908 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
COL5A1P20908 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
COL5A1P20908 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL5A1P20908 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.16■■□□□ 1.14
COL5A1P20908 AC233992.3-201ENST00000607491 485 ntBASIC22.16■■□□□ 1.14
COL5A1P20908 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.16■■□□□ 1.14
COL5A1P20908 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
COL5A1P20908 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.15■■□□□ 1.14
COL5A1P20908 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A1P20908 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A1P20908 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A1P20908 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A1P20908 HACD1-201ENST00000326961 773 ntTSL 2 BASIC22.15■■□□□ 1.14
COL5A1P20908 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A1P20908 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A1P20908 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A1P20908 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A1P20908 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.15■■□□□ 1.14
COL5A1P20908 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL5A1P20908 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.14■■□□□ 1.13
COL5A1P20908 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
COL5A1P20908 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
COL5A1P20908 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
COL5A1P20908 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.13■■□□□ 1.13
COL5A1P20908 AC027612.3-201ENST00000413684 1047 ntBASIC22.13■■□□□ 1.13
COL5A1P20908 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.13■■□□□ 1.13
COL5A1P20908 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.13■■□□□ 1.13
COL5A1P20908 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.13■■□□□ 1.13
COL5A1P20908 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.13■■□□□ 1.13
COL5A1P20908 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A1P20908 AL022069.1-201ENST00000568025 1636 ntBASIC22.12■■□□□ 1.13
COL5A1P20908 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A1P20908 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC22.12■■□□□ 1.13
COL5A1P20908 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A1P20908 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.12■■□□□ 1.13
COL5A1P20908 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.12■■□□□ 1.13
COL5A1P20908 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.12■■□□□ 1.13
COL5A1P20908 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A1P20908 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A1P20908 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
COL5A1P20908 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.11■■□□□ 1.13
COL5A1P20908 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A1P20908 AC090192.1-201ENST00000517740 490 ntBASIC22.11■■□□□ 1.13
COL5A1P20908 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.11■■□□□ 1.13
COL5A1P20908 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A1P20908 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A1P20908 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A1P20908 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A1P20908 KRT18P5-201ENST00000436075 1291 ntBASIC22.1■■□□□ 1.13
COL5A1P20908 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.1■■□□□ 1.13
COL5A1P20908 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A1P20908 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A1P20908 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.1■■□□□ 1.13
COL5A1P20908 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A1P20908 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A1P20908 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.1■■□□□ 1.13
COL5A1P20908 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.1■■□□□ 1.13
COL5A1P20908 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
COL5A1P20908 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.09■■□□□ 1.13
COL5A1P20908 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.09■■□□□ 1.13
COL5A1P20908 AC009086.3-201ENST00000623486 1008 ntBASIC22.09■■□□□ 1.13
COL5A1P20908 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.09■■□□□ 1.13
COL5A1P20908 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.09■■□□□ 1.13
COL5A1P20908 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A1P20908 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A1P20908 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A1P20908 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
COL5A1P20908 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
COL5A1P20908 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.08■■□□□ 1.12
COL5A1P20908 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.08■■□□□ 1.12
COL5A1P20908 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
COL5A1P20908 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
COL5A1P20908 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.07■■□□□ 1.12
COL5A1P20908 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL5A1P20908 IKBKGP1-201ENST00000612193 1073 ntBASIC22.07■■□□□ 1.12
COL5A1P20908 RARRES2P11-201ENST00000635158 484 ntBASIC22.07■■□□□ 1.12
COL5A1P20908 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL5A1P20908 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL5A1P20908 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
COL5A1P20908 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL5A1P20908 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL5A1P20908 SLC47A1P1-202ENST00000449666 945 ntBASIC22.06■■□□□ 1.12
COL5A1P20908 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.06■■□□□ 1.12
COL5A1P20908 MIR3181-201ENST00000578512 73 ntBASIC22.06■■□□□ 1.12
COL5A1P20908 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL5A1P20908 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.06■■□□□ 1.12
COL5A1P20908 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL5A1P20908 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL5A1P20908 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms