Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 AL117328.2-201ENST00000624617 1940 ntBASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
CHKB-CPT1BH3BT56 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CHKB-CPT1BH3BT56 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 AF106564.1-201ENST00000607058 2553 ntBASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CHKB-CPT1BH3BT56 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 AC010864.1-201ENST00000609407 1511 ntBASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 STK25-234ENST00000535007 2459 ntTSL 2 BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CHKB-CPT1BH3BT56 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CHKB-CPT1BH3BT56 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
CHKB-CPT1BH3BT56 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC12.77□□□□□ -0.37
CHKB-CPT1BH3BT56 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 AC015813.7-201ENST00000623294 581 ntBASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC12.76□□□□□ -0.37
CHKB-CPT1BH3BT56 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms