Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.31■□□□□ 0.2
VTA1Q9NP79 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VTA1Q9NP79 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.31■□□□□ 0.2
VTA1Q9NP79 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 AC084781.1-201ENST00000613737 656 ntBASIC16.3■□□□□ 0.2
VTA1Q9NP79 AC025262.2-201ENST00000623975 1056 ntBASIC16.3■□□□□ 0.2
VTA1Q9NP79 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 AC105917.1-201ENST00000506637 2539 ntBASIC16.3■□□□□ 0.2
VTA1Q9NP79 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.3■□□□□ 0.2
VTA1Q9NP79 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VTA1Q9NP79 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.29■□□□□ 0.2
VTA1Q9NP79 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 Z69890.1-201ENST00000382990 339 ntBASIC16.29■□□□□ 0.2
VTA1Q9NP79 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 AC005586.2-201ENST00000563946 837 ntBASIC16.29■□□□□ 0.2
VTA1Q9NP79 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VTA1Q9NP79 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VTA1Q9NP79 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms