Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 AP002761.4-201ENST00000565433 3361 ntBASIC13.1□□□□□ -0.31
MMP28Q9H239 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
MMP28Q9H239 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
MMP28Q9H239 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.1□□□□□ -0.31
MMP28Q9H239 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
MMP28Q9H239 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
MMP28Q9H239 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
MMP28Q9H239 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 AL035633.1-201ENST00000406139 838 ntBASIC13.09□□□□□ -0.31
MMP28Q9H239 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
MMP28Q9H239 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.09□□□□□ -0.31
MMP28Q9H239 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.09□□□□□ -0.31
MMP28Q9H239 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.09□□□□□ -0.31
MMP28Q9H239 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.09□□□□□ -0.31
MMP28Q9H239 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 PHKG1P2-201ENST00000457537 863 ntBASIC13.09□□□□□ -0.31
MMP28Q9H239 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 AC105021.1-202ENST00000570572 669 ntBASIC13.09□□□□□ -0.31
MMP28Q9H239 CYP4F24P-201ENST00000586049 1580 ntBASIC13.09□□□□□ -0.31
MMP28Q9H239 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
MMP28Q9H239 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.09□□□□□ -0.31
MMP28Q9H239 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
MMP28Q9H239 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
MMP28Q9H239 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
MMP28Q9H239 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
MMP28Q9H239 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.08□□□□□ -0.31
MMP28Q9H239 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
MMP28Q9H239 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
MMP28Q9H239 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
MMP28Q9H239 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.08□□□□□ -0.32
MMP28Q9H239 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 AL136982.4-201ENST00000437689 1740 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.08□□□□□ -0.32
MMP28Q9H239 AC007787.1-201ENST00000588095 1583 ntBASIC13.08□□□□□ -0.32
MMP28Q9H239 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
MMP28Q9H239 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.08□□□□□ -0.32
MMP28Q9H239 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
MMP28Q9H239 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms