Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
PKP4Q99569 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PKP4Q99569 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.35□□□□□ -0.11
PKP4Q99569 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.35□□□□□ -0.11
PKP4Q99569 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PKP4Q99569 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 ATP5G2P4-201ENST00000442175 420 ntBASIC14.35□□□□□ -0.11
PKP4Q99569 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.35□□□□□ -0.11
PKP4Q99569 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.35□□□□□ -0.11
PKP4Q99569 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.35□□□□□ -0.11
PKP4Q99569 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.35□□□□□ -0.11
PKP4Q99569 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.35□□□□□ -0.11
PKP4Q99569 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.35□□□□□ -0.11
PKP4Q99569 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PKP4Q99569 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.35□□□□□ -0.11
PKP4Q99569 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PKP4Q99569 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKP4Q99569 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 KHSRPP1-201ENST00000427983 1768 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 AC215219.1-201ENST00000400706 1817 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.34□□□□□ -0.11
PKP4Q99569 GK-202ENST00000378941 458 ntTSL 3 BASIC14.34□□□□□ -0.11
PKP4Q99569 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 YBX1P6-201ENST00000442962 1002 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CICP12-201ENST00000455801 843 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.34□□□□□ -0.11
PKP4Q99569 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PKP4Q99569 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 MIR4741-201ENST00000579822 90 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 AC008825.2-201ENST00000603374 718 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 AL023775.1-201ENST00000454907 1746 ntBASIC14.34□□□□□ -0.11
PKP4Q99569 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PKP4Q99569 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PKP4Q99569 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PKP4Q99569 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
PKP4Q99569 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PKP4Q99569 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PKP4Q99569 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PKP4Q99569 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PKP4Q99569 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PKP4Q99569 SHC1P1-201ENST00000425230 1745 ntBASIC14.33□□□□□ -0.12
PKP4Q99569 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms