Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 OR51A9P-201ENST00000422578 911 ntBASIC14.46□□□□□ -0.09
CXCL12P48061 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.46□□□□□ -0.09
CXCL12P48061 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.46□□□□□ -0.09
CXCL12P48061 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.46□□□□□ -0.09
CXCL12P48061 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC14.46□□□□□ -0.09
CXCL12P48061 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CXCL12P48061 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL12P48061 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.46□□□□□ -0.09
CXCL12P48061 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.46□□□□□ -0.09
CXCL12P48061 AC021016.3-201ENST00000608367 477 ntBASIC14.46□□□□□ -0.09
CXCL12P48061 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.46□□□□□ -0.09
CXCL12P48061 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 AC006504.5-208ENST00000588784 2401 ntBASIC14.46□□□□□ -0.09
CXCL12P48061 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.46□□□□□ -0.1
CXCL12P48061 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.46□□□□□ -0.1
CXCL12P48061 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.46□□□□□ -0.1
CXCL12P48061 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
CXCL12P48061 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC14.46□□□□□ -0.1
CXCL12P48061 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.1
CXCL12P48061 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
CXCL12P48061 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CXCL12P48061 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 AC025183.3-201ENST00000623526 1482 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 RN7SL767P-201ENST00000493013 295 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.45□□□□□ -0.1
CXCL12P48061 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
CXCL12P48061 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.45□□□□□ -0.1
CXCL12P48061 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC14.45□□□□□ -0.1
CXCL12P48061 AL133467.4-201ENST00000602953 725 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 AC006548.2-201ENST00000605217 529 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 AC012073.1-201ENST00000606114 1108 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.45□□□□□ -0.1
CXCL12P48061 AL118522.1-201ENST00000611368 560 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 AC090386.2-201ENST00000623010 1039 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.45□□□□□ -0.1
CXCL12P48061 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.45□□□□□ -0.1
CXCL12P48061 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.45□□□□□ -0.1
CXCL12P48061 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CXCL12P48061 AGGF1P1-201ENST00000509500 2073 ntBASIC14.45□□□□□ -0.1
CXCL12P48061 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CXCL12P48061 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL12P48061 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CXCL12P48061 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms