Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC104982.3-201ENST00000581995 514 ntBASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC011498.7-201ENST00000624986 2027 ntBASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AL009178.2-201ENST00000597278 2719 ntBASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
ZIC4Q8N9L1 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 HNRNPA1P63-201ENST00000427917 963 ntBASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 CD74-212ENST00000524315 584 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC027237.1-201ENST00000560942 655 ntBASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC005695.3-201ENST00000614522 232 ntBASIC13□□□□□ -0.33
ZIC4Q8N9L1 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC026748.1-201ENST00000624349 3251 ntBASIC13□□□□□ -0.33
ZIC4Q8N9L1 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
ZIC4Q8N9L1 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13□□□□□ -0.33
ZIC4Q8N9L1 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.99□□□□□ -0.33
ZIC4Q8N9L1 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.99□□□□□ -0.33
ZIC4Q8N9L1 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
ZIC4Q8N9L1 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.99□□□□□ -0.33
ZIC4Q8N9L1 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms