Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC232323.1-201ENST00000540724 2099 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 MARS-233ENST00000628866 2583 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 AL591499.1-201ENST00000307155 1153 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 LINC01508-201ENST00000425666 1013 ntTSL 3 BASIC10.2□□□□□ -0.78
PRKDCP78527 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC10.2□□□□□ -0.78
PRKDCP78527 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC10.2□□□□□ -0.78
PRKDCP78527 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC10.2□□□□□ -0.78
PRKDCP78527 MIR6871-201ENST00000613433 56 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 SSR4-202ENST00000370085 526 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 TBC1D3P6-201ENST00000505954 962 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC10.2□□□□□ -0.78
PRKDCP78527 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC10.2□□□□□ -0.78
PRKDCP78527 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 AL603832.2-201ENST00000566195 2125 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
PRKDCP78527 RHOC-205ENST00000369636 786 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 SRP9P1-201ENST00000445874 261 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 RN7SL838P-201ENST00000481676 295 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 IGHV7-56-201ENST00000518372 351 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 AL049840.2-201ENST00000602722 535 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 AC010335.3-201ENST00000623767 531 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 AC099552.4-201ENST00000624248 949 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
PRKDCP78527 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC10.2□□□□□ -0.78
PRKDCP78527 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC10.2□□□□□ -0.78
PRKDCP78527 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
PRKDCP78527 RN7SL832P-201ENST00000607781 1756 ntBASIC10.2□□□□□ -0.78
PRKDCP78527 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
PRKDCP78527 RPL10-203ENST00000406022 748 ntTSL 3 BASIC10.19□□□□□ -0.78
PRKDCP78527 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 FAM187B2P-201ENST00000577135 713 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC10.19□□□□□ -0.78
PRKDCP78527 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 RNA5SP491-201ENST00000362936 118 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 AF186996.6-201ENST00000485294 149 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC10.19□□□□□ -0.78
PRKDCP78527 AL133551.1-201ENST00000610279 1222 ntBASIC10.19□□□□□ -0.78
PRKDCP78527 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC10.19□□□□□ -0.78
PRKDCP78527 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC10.19□□□□□ -0.78
PRKDCP78527 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
PRKDCP78527 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
PRKDCP78527 MGST3-204ENST00000367888 778 ntTSL 3 BASIC10.19□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms