Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
CHMP1AQ9HD42 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AL805961.2-201ENST00000642139 4817 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AL512356.2-201ENST00000546955 174 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AL512361.1-201ENST00000554200 418 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AL596442.2-201ENST00000610240 980 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 TEX28P1-201ENST00000613479 1221 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 TEX28P2-201ENST00000617764 1221 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC073592.8-201ENST00000624126 511 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC004899.2-201ENST00000622993 3860 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC099521.3-201ENST00000624251 2938 ntBASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CHMP1AQ9HD42 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
CHMP1AQ9HD42 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms