Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.03□□□□□ -0.16
CLK1P49759 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.03□□□□□ -0.16
CLK1P49759 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.03□□□□□ -0.16
CLK1P49759 AC011474.4-201ENST00000623523 2076 ntBASIC14.03□□□□□ -0.16
CLK1P49759 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.03□□□□□ -0.16
CLK1P49759 DGCR9-201ENST00000609630 2415 ntBASIC14.03□□□□□ -0.16
CLK1P49759 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLK1P49759 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLK1P49759 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.02□□□□□ -0.16
CLK1P49759 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 MST1P2-201ENST00000457982 2291 ntBASIC14.02□□□□□ -0.16
CLK1P49759 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLK1P49759 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.02□□□□□ -0.16
CLK1P49759 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.02□□□□□ -0.16
CLK1P49759 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLK1P49759 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLK1P49759 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CLK1P49759 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CLK1P49759 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 SPDYE19P-201ENST00000338590 713 ntBASIC14.02□□□□□ -0.17
CLK1P49759 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.02□□□□□ -0.17
CLK1P49759 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.02□□□□□ -0.17
CLK1P49759 AC087499.6-201ENST00000411576 835 ntBASIC14.02□□□□□ -0.17
CLK1P49759 DFFBP1-201ENST00000433250 979 ntBASIC14.02□□□□□ -0.17
CLK1P49759 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 SPTLC1P1-201ENST00000447199 261 ntBASIC14.02□□□□□ -0.17
CLK1P49759 RPL13AP25-201ENST00000484130 612 ntBASIC14.02□□□□□ -0.17
CLK1P49759 AC055876.2-201ENST00000531834 546 ntBASIC14.02□□□□□ -0.17
CLK1P49759 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.02□□□□□ -0.17
CLK1P49759 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
CLK1P49759 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
CLK1P49759 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLK1P49759 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.02□□□□□ -0.17
CLK1P49759 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLK1P49759 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.01□□□□□ -0.17
CLK1P49759 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CLK1P49759 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
CLK1P49759 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.01□□□□□ -0.17
CLK1P49759 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLK1P49759 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.01□□□□□ -0.17
CLK1P49759 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 RN7SL399P-201ENST00000471648 279 ntBASIC14.01□□□□□ -0.17
CLK1P49759 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.01□□□□□ -0.17
CLK1P49759 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.01□□□□□ -0.17
CLK1P49759 SPDYE18-201ENST00000510091 1050 ntBASIC14.01□□□□□ -0.17
CLK1P49759 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms