Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.88■□□□□ 0.29
SCN4AP35499 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.88■□□□□ 0.29
SCN4AP35499 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.88■□□□□ 0.29
SCN4AP35499 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SCN4AP35499 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
SCN4AP35499 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SCN4AP35499 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SCN4AP35499 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SCN4AP35499 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 AC103563.1-201ENST00000429316 123 ntBASIC16.87■□□□□ 0.29
SCN4AP35499 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 VDAC1P11-201ENST00000458323 852 ntBASIC16.87■□□□□ 0.29
SCN4AP35499 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC16.87■□□□□ 0.29
SCN4AP35499 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 AL512324.3-201ENST00000619383 882 ntBASIC16.87■□□□□ 0.29
SCN4AP35499 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC16.87■□□□□ 0.29
SCN4AP35499 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 CICP23-201ENST00000605013 2741 ntBASIC16.87■□□□□ 0.29
SCN4AP35499 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SCN4AP35499 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SCN4AP35499 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC16.87■□□□□ 0.29
SCN4AP35499 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.87■□□□□ 0.29
SCN4AP35499 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SCN4AP35499 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 U3.5-201ENST00000363448 216 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 RPSAP12-201ENST00000435879 888 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 AL773545.2-201ENST00000442149 472 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC16.86■□□□□ 0.29
SCN4AP35499 AC093700.1-201ENST00000503348 717 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 FAM187B2P-201ENST00000577135 713 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 AL162727.3-201ENST00000635661 2787 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 LILRP2-202ENST00000413572 1383 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
SCN4AP35499 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
SCN4AP35499 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 TPT1P6-201ENST00000458298 514 ntBASIC16.86■□□□□ 0.29
SCN4AP35499 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC16.86■□□□□ 0.29
SCN4AP35499 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.86■□□□□ 0.29
SCN4AP35499 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.86■□□□□ 0.29
SCN4AP35499 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SCN4AP35499 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms