Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA1O95477 PRKXP1-201ENST00000561423 1122 ntBASIC12.48□□□□□ -0.41
ABCA1O95477 AC138466.3-201ENST00000619983 221 ntBASIC12.48□□□□□ -0.41
ABCA1O95477 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA1O95477 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 KRT8P21-201ENST00000430398 1491 ntBASIC12.47□□□□□ -0.41
ABCA1O95477 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 CLUHP2-201ENST00000426660 1303 ntBASIC12.47□□□□□ -0.41
ABCA1O95477 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.47□□□□□ -0.41
ABCA1O95477 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 AL627389.1-201ENST00000413508 1182 ntBASIC12.47□□□□□ -0.41
ABCA1O95477 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA1O95477 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA1O95477 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA1O95477 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.47□□□□□ -0.41
ABCA1O95477 MIR3147-201ENST00000577811 66 ntBASIC12.47□□□□□ -0.41
ABCA1O95477 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.47□□□□□ -0.41
ABCA1O95477 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
ABCA1O95477 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.47□□□□□ -0.41
ABCA1O95477 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
ABCA1O95477 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA1O95477 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA1O95477 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
ABCA1O95477 NOC2LP1-201ENST00000450578 752 ntBASIC12.46□□□□□ -0.41
ABCA1O95477 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.46□□□□□ -0.41
ABCA1O95477 AC106794.1-201ENST00000506935 792 ntBASIC12.46□□□□□ -0.41
ABCA1O95477 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.46□□□□□ -0.41
ABCA1O95477 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.46□□□□□ -0.41
ABCA1O95477 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC12.46□□□□□ -0.41
ABCA1O95477 AC138894.2-201ENST00000602838 371 ntBASIC12.46□□□□□ -0.41
ABCA1O95477 AC090164.2-201ENST00000611487 516 ntBASIC12.46□□□□□ -0.41
ABCA1O95477 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.41
ABCA1O95477 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.46□□□□□ -0.41
ABCA1O95477 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.41
ABCA1O95477 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
ABCA1O95477 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC12.46□□□□□ -0.41
ABCA1O95477 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
ABCA1O95477 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms