Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RNF40O75150 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RNF40O75150 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF40O75150 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF40O75150 PPT1-213ENST00000641319 2388 ntBASIC16.11■□□□□ 0.17
RNF40O75150 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RNF40O75150 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 AC099336.1-201ENST00000417053 1171 ntBASIC16.1■□□□□ 0.17
RNF40O75150 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 AC134915.1-201ENST00000426461 574 ntBASIC16.1■□□□□ 0.17
RNF40O75150 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
RNF40O75150 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF40O75150 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 INTS4P2-202ENST00000614726 2019 ntBASIC16.1■□□□□ 0.17
RNF40O75150 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
RNF40O75150 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF40O75150 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF40O75150 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF40O75150 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
RNF40O75150 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
RNF40O75150 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RNF40O75150 MIR1908-201ENST00000410394 80 ntBASIC16.09■□□□□ 0.17
RNF40O75150 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.09■□□□□ 0.17
RNF40O75150 SEC63P1-201ENST00000425785 1258 ntBASIC16.09■□□□□ 0.17
RNF40O75150 KRT18P64-201ENST00000434946 1219 ntBASIC16.09■□□□□ 0.17
RNF40O75150 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF40O75150 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF40O75150 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 AC068587.3-201ENST00000526613 355 ntBASIC16.09■□□□□ 0.17
RNF40O75150 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 PTP4A1P2-201ENST00000546033 454 ntBASIC16.09■□□□□ 0.17
RNF40O75150 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF40O75150 AC124283.3-201ENST00000570869 594 ntBASIC16.09■□□□□ 0.17
RNF40O75150 RN7SL121P-201ENST00000584223 273 ntBASIC16.09■□□□□ 0.17
RNF40O75150 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF40O75150 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF40O75150 TMEM14EP-202ENST00000639378 1296 ntBASIC16.09■□□□□ 0.17
RNF40O75150 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF40O75150 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF40O75150 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF40O75150 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms