Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.28□□□□□ -0.12
SLC28A1O00337 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.28□□□□□ -0.12
SLC28A1O00337 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 AC093433.1-201ENST00000458048 571 ntBASIC14.28□□□□□ -0.12
SLC28A1O00337 CYMP-203ENST00000474680 1263 ntBASIC14.28□□□□□ -0.12
SLC28A1O00337 ELK1P1-201ENST00000485699 580 ntBASIC14.28□□□□□ -0.12
SLC28A1O00337 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.28□□□□□ -0.12
SLC28A1O00337 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.28□□□□□ -0.12
SLC28A1O00337 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SLC28A1O00337 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.28□□□□□ -0.12
SLC28A1O00337 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.28□□□□□ -0.12
SLC28A1O00337 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 CICP4-201ENST00000447359 2812 ntBASIC14.28□□□□□ -0.12
SLC28A1O00337 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SLC28A1O00337 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.27□□□□□ -0.12
SLC28A1O00337 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SLC28A1O00337 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SLC28A1O00337 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SLC28A1O00337 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.27□□□□□ -0.12
SLC28A1O00337 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 RN7SKP230-201ENST00000365642 335 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 AC245100.3-201ENST00000441281 285 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 TSPY16P-201ENST00000449843 468 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 MESTP3-201ENST00000503460 968 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 AJ011932.1-201ENST00000621707 465 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 AC012617.1-204ENST00000586340 2305 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.27□□□□□ -0.13
SLC28A1O00337 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.27□□□□□ -0.13
SLC28A1O00337 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.27□□□□□ -0.13
SLC28A1O00337 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.27□□□□□ -0.13
SLC28A1O00337 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.27□□□□□ -0.13
SLC28A1O00337 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.27□□□□□ -0.13
SLC28A1O00337 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SLC28A1O00337 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.26□□□□□ -0.13
SLC28A1O00337 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SLC28A1O00337 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 KRT8P24-201ENST00000560290 1559 ntBASIC14.26□□□□□ -0.13
SLC28A1O00337 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SLC28A1O00337 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.26□□□□□ -0.13
SLC28A1O00337 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.26□□□□□ -0.13
SLC28A1O00337 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SLC28A1O00337 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.26□□□□□ -0.13
SLC28A1O00337 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms