Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AL583805.1-201ENST00000391389 531 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AC253536.4-201ENST00000440539 267 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 NOC2LP1-201ENST00000450578 752 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AC007881.3-201ENST00000608897 607 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 LINC01783-202ENST00000614408 828 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AC242376.2-201ENST00000619355 883 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 BX284668.2-205ENST00000619677 828 ntBASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 CMC2-224ENST00000630396 481 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM1Q2M3G4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AC009093.10-201ENST00000641956 1442 ntBASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AP000356.3-201ENST00000382243 753 ntBASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 MIR557-201ENST00000385239 98 ntBASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 AL022334.2-201ENST00000610000 484 ntBASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 DBET-201ENST00000630918 3363 ntBASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM1Q2M3G4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 BANF1P3-201ENST00000412556 261 ntBASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 ST13P19-201ENST00000442505 1124 ntBASIC17.07■□□□□ 0.32
SHROOM1Q2M3G4 AC098935.1-201ENST00000446057 611 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms