Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
RPL39P62891 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC10.53□□□□□ -0.72
RPL39P62891 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 AC020658.7-201ENST00000624274 2442 ntBASIC10.53□□□□□ -0.72
RPL39P62891 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
RPL39P62891 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC10.53□□□□□ -0.72
RPL39P62891 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC10.53□□□□□ -0.72
RPL39P62891 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
RPL39P62891 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
RPL39P62891 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC10.52□□□□□ -0.72
RPL39P62891 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
RPL39P62891 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC10.52□□□□□ -0.72
RPL39P62891 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
RPL39P62891 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
RPL39P62891 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC10.52□□□□□ -0.73
RPL39P62891 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC10.52□□□□□ -0.73
RPL39P62891 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 RBPMS2P1-201ENST00000437762 623 ntBASIC10.52□□□□□ -0.73
RPL39P62891 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC10.52□□□□□ -0.73
RPL39P62891 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC10.52□□□□□ -0.73
RPL39P62891 SLC25A1P1-201ENST00000528351 927 ntBASIC10.52□□□□□ -0.73
RPL39P62891 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC10.52□□□□□ -0.73
RPL39P62891 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 AC026150.2-201ENST00000564693 1156 ntBASIC10.52□□□□□ -0.73
RPL39P62891 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC10.52□□□□□ -0.73
RPL39P62891 PIN1-206ENST00000587625 878 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 CROT-203ENST00000419147 2959 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.52□□□□□ -0.73
RPL39P62891 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.52□□□□□ -0.73
RPL39P62891 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
RPL39P62891 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
RPL39P62891 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC10.51□□□□□ -0.73
RPL39P62891 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.51□□□□□ -0.73
RPL39P62891 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 AC015909.5-201ENST00000624336 2266 ntBASIC10.51□□□□□ -0.73
RPL39P62891 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 KRT8P14-201ENST00000414254 1442 ntBASIC10.51□□□□□ -0.73
RPL39P62891 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC10.51□□□□□ -0.73
RPL39P62891 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
RPL39P62891 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
RPL39P62891 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
RPL39P62891 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
RPL39P62891 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms