Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SOX2P48431 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 AC254562.1-201ENST00000417586 456 ntBASIC13.11□□□□□ -0.31
SOX2P48431 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.11□□□□□ -0.31
SOX2P48431 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 CNN2P2-201ENST00000443536 909 ntBASIC13.11□□□□□ -0.31
SOX2P48431 CNN2P3-201ENST00000450201 906 ntBASIC13.11□□□□□ -0.31
SOX2P48431 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
SOX2P48431 GAPDHP40-201ENST00000505218 1006 ntBASIC13.11□□□□□ -0.31
SOX2P48431 AC069120.2-201ENST00000524091 540 ntBASIC13.11□□□□□ -0.31
SOX2P48431 SNHG9-202ENST00000564014 471 ntBASIC13.11□□□□□ -0.31
SOX2P48431 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.11□□□□□ -0.31
SOX2P48431 AL596442.2-201ENST00000610240 980 ntBASIC13.11□□□□□ -0.31
SOX2P48431 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.11□□□□□ -0.31
SOX2P48431 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.11□□□□□ -0.31
SOX2P48431 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 AL136317.3-201ENST00000618497 906 ntBASIC13.11□□□□□ -0.31
SOX2P48431 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SOX2P48431 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 AL137784.3-201ENST00000623858 2288 ntBASIC13.11□□□□□ -0.31
SOX2P48431 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 AC087499.5-201ENST00000452760 1342 ntBASIC13.11□□□□□ -0.31
SOX2P48431 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 AC130686.1-201ENST00000622936 2466 ntBASIC13.11□□□□□ -0.31
SOX2P48431 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX2P48431 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SOX2P48431 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
SOX2P48431 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 AC005252.3-201ENST00000623855 2258 ntBASIC13.1□□□□□ -0.31
SOX2P48431 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 CICP16-201ENST00000502609 2813 ntBASIC13.1□□□□□ -0.31
SOX2P48431 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.1□□□□□ -0.31
SOX2P48431 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX2P48431 AL353779.1-201ENST00000434793 351 ntBASIC13.1□□□□□ -0.31
SOX2P48431 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX2P48431 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.1□□□□□ -0.31
SOX2P48431 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.1□□□□□ -0.31
SOX2P48431 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX2P48431 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SOX2P48431 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX2P48431 AC107373.2-201ENST00000607735 490 ntBASIC13.1□□□□□ -0.31
SOX2P48431 AL844908.2-201ENST00000609461 460 ntBASIC13.1□□□□□ -0.31
SOX2P48431 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 AC090505.1-201ENST00000430515 1834 ntBASIC13.1□□□□□ -0.31
SOX2P48431 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms