Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PTPN4P29074 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.96□□□□□ -0.01
PTPN4P29074 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PTPN4P29074 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.96□□□□□ -0.01
PTPN4P29074 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 HNRNPUP1-201ENST00000554987 333 ntBASIC14.96□□□□□ -0.01
PTPN4P29074 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTPN4P29074 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.96□□□□□ -0.01
PTPN4P29074 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.96□□□□□ -0.01
PTPN4P29074 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
PTPN4P29074 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
PTPN4P29074 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
PTPN4P29074 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
PTPN4P29074 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTPN4P29074 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.96□□□□□ -0.02
PTPN4P29074 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTPN4P29074 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 AL591122.2-201ENST00000624125 1853 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 MIR1909-201ENST00000411312 80 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 AZGP1P1-201ENST00000411909 902 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 HLA-V-201ENST00000429037 534 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 RN7SL399P-201ENST00000471648 279 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 TMEM198B-204ENST00000484016 896 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 AC092552.1-201ENST00000547243 906 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.95□□□□□ -0.02
PTPN4P29074 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 LINC01115-203ENST00000606068 577 ntBASIC14.95□□□□□ -0.02
PTPN4P29074 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.95□□□□□ -0.02
PTPN4P29074 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
PTPN4P29074 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
PTPN4P29074 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
PTPN4P29074 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTPN4P29074 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.94□□□□□ -0.02
PTPN4P29074 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PTPN4P29074 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms