Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC14.82□□□□□ -0.04
COL6A3P12111 AL049542.1-201ENST00000430231 278 ntBASIC14.82□□□□□ -0.04
COL6A3P12111 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A3P12111 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 HINT1-208ENST00000513012 583 ntTSL 4 BASIC14.82□□□□□ -0.04
COL6A3P12111 RNA5SP420-201ENST00000516997 137 ntBASIC14.82□□□□□ -0.04
COL6A3P12111 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.82□□□□□ -0.04
COL6A3P12111 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A3P12111 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.82□□□□□ -0.04
COL6A3P12111 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL6A3P12111 AC099398.1-201ENST00000567919 2776 ntBASIC14.82□□□□□ -0.04
COL6A3P12111 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL6A3P12111 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A3P12111 RBP4-203ENST00000371469 814 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL6A3P12111 AC139143.1-201ENST00000441772 1207 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 RNA5SP288-201ENST00000516075 93 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 AL133551.1-201ENST00000610279 1222 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL6A3P12111 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 RFNG-202ENST00000429557 994 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 CNN2P1-201ENST00000453616 918 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 AP005264.5-201ENST00000590066 467 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A3P12111 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC14.81□□□□□ -0.04
COL6A3P12111 AL161727.1-201ENST00000457409 530 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 AC099552.4-201ENST00000624248 949 ntBASIC14.81□□□□□ -0.04
COL6A3P12111 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A3P12111 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A3P12111 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A3P12111 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 BAK1P2-201ENST00000532665 631 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 AC078925.1-201ENST00000535370 568 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A3P12111 AC145285.5-201ENST00000562217 361 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.8□□□□□ -0.04
COL6A3P12111 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
COL6A3P12111 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A3P12111 AC079742.1-201ENST00000434951 357 ntTSL 3 BASIC14.8□□□□□ -0.04
COL6A3P12111 KRT19P4-201ENST00000443208 943 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 GRPEL2P1-201ENST00000453145 339 ntBASIC14.8□□□□□ -0.04
COL6A3P12111 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.8□□□□□ -0.04
COL6A3P12111 AC093300.1-201ENST00000510368 1201 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms