Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 RNA5SP486-201ENST00000515961 83 ntBASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 DUX4L47-201ENST00000566374 394 ntBASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 YBX1P6-201ENST00000442962 1002 ntBASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC026434.2-201ENST00000506094 1078 ntBASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AP006547.1-201ENST00000563435 692 ntBASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CHMP4CQ96CF2 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC113367.3-201ENST00000508316 1912 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 MIR326-201ENST00000362220 95 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 TPT1P11-201ENST00000458482 498 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 ENPP7P14-201ENST00000621765 1040 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC005089.1-201ENST00000619486 2241 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 AC015656.1-201ENST00000624209 3578 ntBASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CHMP4CQ96CF2 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms