Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
BDNFP23560 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
BDNFP23560 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 CICP14-201ENST00000629111 2732 ntBASIC15.59■□□□□ 0.09
BDNFP23560 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.59■□□□□ 0.09
BDNFP23560 AC138028.6-201ENST00000616106 1482 ntBASIC15.59■□□□□ 0.09
BDNFP23560 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
BDNFP23560 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.59■□□□□ 0.09
BDNFP23560 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
BDNFP23560 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.59■□□□□ 0.09
BDNFP23560 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.59■□□□□ 0.09
BDNFP23560 FAM58BP-201ENST00000439056 645 ntBASIC15.59■□□□□ 0.09
BDNFP23560 AL035414.1-201ENST00000451327 857 ntBASIC15.59■□□□□ 0.09
BDNFP23560 EIF4HP1-201ENST00000453115 687 ntBASIC15.59■□□□□ 0.09
BDNFP23560 RPL18P13-201ENST00000478088 569 ntBASIC15.59■□□□□ 0.09
BDNFP23560 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.59■□□□□ 0.09
BDNFP23560 SCARNA20.5-201ENST00000516991 142 ntBASIC15.59■□□□□ 0.09
BDNFP23560 RN7SL163P-201ENST00000583100 276 ntBASIC15.59■□□□□ 0.09
BDNFP23560 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 MIR6720-201ENST00000611664 98 ntBASIC15.59■□□□□ 0.09
BDNFP23560 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.59■□□□□ 0.09
BDNFP23560 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 AL008718.2-201ENST00000609206 1313 ntBASIC15.59■□□□□ 0.09
BDNFP23560 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
BDNFP23560 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
BDNFP23560 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
BDNFP23560 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.58■□□□□ 0.09
BDNFP23560 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
BDNFP23560 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
BDNFP23560 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.58■□□□□ 0.08
BDNFP23560 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 BX284668.4-201ENST00000453917 508 ntBASIC15.58■□□□□ 0.08
BDNFP23560 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.58■□□□□ 0.08
BDNFP23560 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.58■□□□□ 0.08
BDNFP23560 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
BDNFP23560 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 AC005962.1-201ENST00000584100 773 ntBASIC15.58■□□□□ 0.08
BDNFP23560 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 AL139099.5-201ENST00000635274 300 ntBASIC15.58■□□□□ 0.08
BDNFP23560 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.58■□□□□ 0.08
BDNFP23560 Z98259.2-201ENST00000641583 609 ntBASIC15.58■□□□□ 0.08
BDNFP23560 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.58■□□□□ 0.08
BDNFP23560 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.58■□□□□ 0.08
BDNFP23560 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
BDNFP23560 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
BDNFP23560 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.58■□□□□ 0.08
BDNFP23560 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
BDNFP23560 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.57■□□□□ 0.08
BDNFP23560 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms