Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 AC067931.2-201ENST00000623655 2003 ntBASIC19.14■□□□□ 0.65
COL3A1P02461 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 USP39-220ENST00000613444 2161 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.14■□□□□ 0.65
COL3A1P02461 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 BANF1P3-201ENST00000412556 261 ntBASIC19.14■□□□□ 0.65
COL3A1P02461 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.14■□□□□ 0.65
COL3A1P02461 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC19.14■□□□□ 0.65
COL3A1P02461 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL3A1P02461 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.14■□□□□ 0.65
COL3A1P02461 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
COL3A1P02461 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 LINC00115-201ENST00000473798 1317 ntBASIC19.13■□□□□ 0.65
COL3A1P02461 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.13■□□□□ 0.65
COL3A1P02461 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC19.13■□□□□ 0.65
COL3A1P02461 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 USP4-203ENST00000415188 1454 ntTSL 3 BASIC19.13■□□□□ 0.65
COL3A1P02461 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC19.13■□□□□ 0.65
COL3A1P02461 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL3A1P02461 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL3A1P02461 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 RPL8P2-201ENST00000430538 502 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 EEF1DP6-201ENST00000449232 372 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 DUX4L50-201ENST00000455245 715 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 FTH1P22-201ENST00000456305 520 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.12■□□□□ 0.65
COL3A1P02461 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 PFN2-206ENST00000461930 606 ntTSL 4 BASIC19.12■□□□□ 0.65
COL3A1P02461 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 POU5F1P2-201ENST00000521750 823 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 AC018635.2-201ENST00000608625 364 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 AC128714.1-201ENST00000637035 887 ntBASIC19.12■□□□□ 0.65
COL3A1P02461 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC19.12■□□□□ 0.65
COL3A1P02461 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL3A1P02461 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
COL3A1P02461 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL3A1P02461 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.11■□□□□ 0.65
COL3A1P02461 AC016397.2-201ENST00000624848 1985 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL3A1P02461 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.11■□□□□ 0.65
COL3A1P02461 DUTP3-201ENST00000450025 415 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.11■□□□□ 0.65
COL3A1P02461 AP000358.1-201ENST00000456260 156 ntBASIC19.11■□□□□ 0.65
COL3A1P02461 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
COL3A1P02461 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms