Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 SORD2P-201ENST00000558556 1069 ntBASIC13.65□□□□□ -0.22
NKX2-2O95096 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX2-2O95096 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX2-2O95096 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.65□□□□□ -0.22
NKX2-2O95096 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
NKX2-2O95096 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 KRT8P28-201ENST00000433288 1390 ntBASIC13.65□□□□□ -0.22
NKX2-2O95096 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.65□□□□□ -0.22
NKX2-2O95096 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.65□□□□□ -0.22
NKX2-2O95096 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 AL136379.1-201ENST00000623471 2642 ntBASIC13.65□□□□□ -0.22
NKX2-2O95096 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
NKX2-2O95096 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
NKX2-2O95096 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 ANKRD19P-201ENST00000338192 862 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 MIR1909-201ENST00000411312 80 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.64□□□□□ -0.23
NKX2-2O95096 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.64□□□□□ -0.23
NKX2-2O95096 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 CICP12-201ENST00000455801 843 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.64□□□□□ -0.23
NKX2-2O95096 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 AC104989.1-201ENST00000519711 778 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.64□□□□□ -0.23
NKX2-2O95096 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 AC027601.3-201ENST00000622907 509 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.64□□□□□ -0.23
NKX2-2O95096 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NKX2-2O95096 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NKX2-2O95096 AC009093.10-201ENST00000641956 1442 ntBASIC13.64□□□□□ -0.23
NKX2-2O95096 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX2-2O95096 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX2-2O95096 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX2-2O95096 HIST2H2BB-201ENST00000449108 381 ntBASIC13.63□□□□□ -0.23
NKX2-2O95096 ACA64.2-201ENST00000459014 129 ntBASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms