Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC010328.2-201ENST00000597698 1111 ntBASIC14.49□□□□□ -0.09
VPS4AQ9UN37 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC005840.4-201ENST00000541242 2494 ntBASIC14.49□□□□□ -0.09
VPS4AQ9UN37 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS4AQ9UN37 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 MTHFR-210ENST00000641407 2387 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 BCRP2-202ENST00000447763 634 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 RN7SL399P-201ENST00000471648 279 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 BCRP6-201ENST00000510112 632 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 BCRP7-201ENST00000511549 544 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 SAMD11P1-201ENST00000571429 661 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 MIR3615-201ENST00000581999 87 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 AC000095.1-201ENST00000603208 874 ntBASIC14.48□□□□□ -0.09
VPS4AQ9UN37 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
VPS4AQ9UN37 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AC138969.2-201ENST00000532739 9932 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AL442647.2-201ENST00000429864 857 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 AL355864.2-201ENST00000447420 863 ntBASIC14.47□□□□□ -0.09
VPS4AQ9UN37 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms