Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.21□□□□□ -0.29
MMP28Q9H239 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.21□□□□□ -0.29
MMP28Q9H239 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.21□□□□□ -0.29
MMP28Q9H239 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.21□□□□□ -0.29
MMP28Q9H239 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
MMP28Q9H239 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.21□□□□□ -0.29
MMP28Q9H239 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.21□□□□□ -0.29
MMP28Q9H239 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.21□□□□□ -0.29
MMP28Q9H239 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
MMP28Q9H239 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.21□□□□□ -0.29
MMP28Q9H239 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.21□□□□□ -0.3
MMP28Q9H239 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
MMP28Q9H239 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
MMP28Q9H239 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
MMP28Q9H239 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.2□□□□□ -0.3
MMP28Q9H239 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.2□□□□□ -0.3
MMP28Q9H239 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.2□□□□□ -0.3
MMP28Q9H239 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 RARRES2P9-201ENST00000565168 469 ntBASIC13.2□□□□□ -0.3
MMP28Q9H239 AC009093.7-201ENST00000623853 1223 ntBASIC13.2□□□□□ -0.3
MMP28Q9H239 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 KRT8P22-201ENST00000562317 1415 ntBASIC13.2□□□□□ -0.3
MMP28Q9H239 AL691432.1-201ENST00000596308 1422 ntBASIC13.2□□□□□ -0.3
MMP28Q9H239 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
MMP28Q9H239 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.2□□□□□ -0.3
MMP28Q9H239 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
MMP28Q9H239 AP3S2-216ENST00000617003 1561 ntBASIC13.2□□□□□ -0.3
MMP28Q9H239 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 CES1P1-201ENST00000421606 1704 ntBASIC13.19□□□□□ -0.3
MMP28Q9H239 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
MMP28Q9H239 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
MMP28Q9H239 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 ALG1L8P-201ENST00000533887 760 ntBASIC13.19□□□□□ -0.3
MMP28Q9H239 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.19□□□□□ -0.3
MMP28Q9H239 AC093520.2-201ENST00000561830 333 ntBASIC13.19□□□□□ -0.3
MMP28Q9H239 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
MMP28Q9H239 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms