Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 GIMAP3P-201ENST00000495150 836 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 DUX4L27-201ENST00000554796 1261 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 AC104794.3-201ENST00000566840 1248 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC54Q8NEL0 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 AL359881.3-201ENST00000602640 1721 ntBASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 OR2I1P-208ENST00000641137 4948 ntBASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.02□□□□□ -0.32
CCDC54Q8NEL0 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 METTL21AP1-201ENST00000438852 635 ntBASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 SPDYE18-201ENST00000510091 1050 ntBASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 MIR6074-201ENST00000612054 107 ntBASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC54Q8NEL0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 264.5 ms