Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 RN7SL277P-201ENST00000481521 288 ntBASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 TEKT4P2-202ENST00000559466 1312 ntBASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
CCDC88AQ3V6T2 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 MIR645-201ENST00000385283 94 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 NME4-203ENST00000397722 1232 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AL132994.1-201ENST00000554098 400 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC007250.1-201ENST00000608934 338 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC104640.1-201ENST00000562617 2109 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 BRI3P1-201ENST00000440440 378 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AP005212.2-201ENST00000584979 510 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 AC006548.2-201ENST00000605217 529 ntBASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC88AQ3V6T2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC88AQ3V6T2 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC88AQ3V6T2 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 DUX4L50-201ENST00000455245 715 ntBASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 OR2A1-AS1-210ENST00000496968 531 ntBASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 AC013553.1-201ENST00000560906 267 ntBASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 RARS-210ENST00000626454 177 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC88AQ3V6T2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms