Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 AJ011931.1-201ENST00000618749 2492 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 EEF1GP8-201ENST00000506566 1154 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC18.88■□□□□ 0.61
COL18A1P39060 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 AL359091.4-201ENST00000610052 409 ntBASIC18.88■□□□□ 0.61
COL18A1P39060 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
COL18A1P39060 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.88■□□□□ 0.61
COL18A1P39060 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.88■□□□□ 0.61
COL18A1P39060 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL18A1P39060 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.88■□□□□ 0.61
COL18A1P39060 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC232323.1-201ENST00000540724 2099 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.87■□□□□ 0.61
COL18A1P39060 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.87■□□□□ 0.61
COL18A1P39060 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC18.87■□□□□ 0.61
COL18A1P39060 LINP1-201ENST00000417112 917 ntTSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 HLA-DPA2-205ENST00000433582 733 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC18.87■□□□□ 0.61
COL18A1P39060 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 RN7SL147P-201ENST00000487345 298 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC008026.2-201ENST00000495438 348 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC068831.5-201ENST00000557387 328 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.87■□□□□ 0.61
COL18A1P39060 AL160191.2-201ENST00000603975 601 ntBASIC18.87■□□□□ 0.61
COL18A1P39060 PLS3-210ENST00000626746 216 ntTSL 4 BASIC18.87■□□□□ 0.61
COL18A1P39060 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC18.87■□□□□ 0.61
COL18A1P39060 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL18A1P39060 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL18A1P39060 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL18A1P39060 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 KRT18P4-201ENST00000422599 1288 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC18.86■□□□□ 0.61
COL18A1P39060 IGHEP2-201ENST00000519308 1256 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC18.86■□□□□ 0.61
COL18A1P39060 MIR4265-201ENST00000582152 99 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 AC008894.3-201ENST00000624324 3103 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL18A1P39060 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 SHMT1P1-201ENST00000419974 1312 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 AC090136.2-201ENST00000517809 420 ntBASIC18.86■□□□□ 0.61
COL18A1P39060 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC18.86■□□□□ 0.61
COL18A1P39060 MME-218ENST00000625667 363 ntTSL 5 BASIC18.86■□□□□ 0.61
COL18A1P39060 CICP6-201ENST00000457191 2729 ntBASIC18.85■□□□□ 0.61
COL18A1P39060 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms