Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HYMAI-201ENST00000635591 3347 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL5A1P20908 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
COL5A1P20908 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.87□□□□□ -0.19
COL5A1P20908 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC13.87□□□□□ -0.19
COL5A1P20908 OR2A1-AS1-210ENST00000496968 531 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC13.87□□□□□ -0.19
COL5A1P20908 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC13.87□□□□□ -0.19
COL5A1P20908 RN7SL596P-201ENST00000582123 288 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 AC021016.3-201ENST00000608367 477 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 AL118522.1-201ENST00000611368 560 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 AP001527.2-201ENST00000614441 631 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 AL451007.2-201ENST00000632004 563 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.87□□□□□ -0.19
COL5A1P20908 TNRC18P2-201ENST00000417666 2714 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AC018442.1-201ENST00000421439 2061 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL5A1P20908 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 LAP3P2-201ENST00000454686 1454 ntBASIC13.87□□□□□ -0.19
COL5A1P20908 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL5A1P20908 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
COL5A1P20908 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.86□□□□□ -0.19
COL5A1P20908 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.86□□□□□ -0.19
COL5A1P20908 CTBP2P8-201ENST00000422584 1330 ntBASIC13.86□□□□□ -0.19
COL5A1P20908 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.86□□□□□ -0.19
COL5A1P20908 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC13.86□□□□□ -0.19
COL5A1P20908 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC13.86□□□□□ -0.19
COL5A1P20908 PGAM1P12-201ENST00000505622 748 ntBASIC13.86□□□□□ -0.19
COL5A1P20908 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
COL5A1P20908 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.86□□□□□ -0.19
COL5A1P20908 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.86□□□□□ -0.19
COL5A1P20908 HKR1-225ENST00000592168 566 ntTSL 4 BASIC13.86□□□□□ -0.19
COL5A1P20908 DGAT2L7P-201ENST00000602462 744 ntBASIC13.86□□□□□ -0.19
COL5A1P20908 ETV2-207ENST00000619399 994 ntTSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 AC002472.4-201ENST00000641915 272 ntBASIC13.86□□□□□ -0.19
COL5A1P20908 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 AC006504.5-208ENST00000588784 2401 ntBASIC13.86□□□□□ -0.19
COL5A1P20908 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.86□□□□□ -0.19
COL5A1P20908 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.86□□□□□ -0.19
COL5A1P20908 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL5A1P20908 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.85□□□□□ -0.19
COL5A1P20908 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL5A1P20908 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 NDUFB10P1-201ENST00000567319 521 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.85□□□□□ -0.19
COL5A1P20908 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 EIF5AP2-201ENST00000585668 1047 ntBASIC13.85□□□□□ -0.19
COL5A1P20908 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC13.85□□□□□ -0.19
COL5A1P20908 RNF146-211ENST00000609447 607 ntTSL 4 BASIC13.85□□□□□ -0.19
COL5A1P20908 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms