Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CHRNA1P02708 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.99■□□□□ 0.15
CHRNA1P02708 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
CHRNA1P02708 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CHRNA1P02708 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 KRT18P9-201ENST00000604826 1300 ntBASIC15.98■□□□□ 0.15
CHRNA1P02708 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.98■□□□□ 0.15
CHRNA1P02708 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.98■□□□□ 0.15
CHRNA1P02708 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.98■□□□□ 0.15
CHRNA1P02708 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.98■□□□□ 0.15
CHRNA1P02708 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.98■□□□□ 0.15
CHRNA1P02708 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.98■□□□□ 0.15
CHRNA1P02708 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.98■□□□□ 0.15
CHRNA1P02708 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.98■□□□□ 0.15
CHRNA1P02708 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.98■□□□□ 0.15
CHRNA1P02708 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.98■□□□□ 0.15
CHRNA1P02708 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 AC005632.3-201ENST00000605544 308 ntBASIC15.98■□□□□ 0.15
CHRNA1P02708 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CHRNA1P02708 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
CHRNA1P02708 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.98■□□□□ 0.15
CHRNA1P02708 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CHRNA1P02708 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CHRNA1P02708 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.98■□□□□ 0.15
CHRNA1P02708 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.97■□□□□ 0.15
CHRNA1P02708 KRT8P31-201ENST00000504812 1408 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CHRNA1P02708 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.97■□□□□ 0.15
CHRNA1P02708 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.97■□□□□ 0.15
CHRNA1P02708 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 ST13P19-201ENST00000442505 1124 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 DUTP3-201ENST00000450025 415 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 AC130709.1-201ENST00000484779 1212 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CHRNA1P02708 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 AP002803.1-201ENST00000528836 498 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CHRNA1P02708 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
CHRNA1P02708 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.97■□□□□ 0.15
CHRNA1P02708 MIR4522-201ENST00000584932 87 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC15.97■□□□□ 0.15
CHRNA1P02708 AC009560.1-201ENST00000620208 434 ntBASIC15.97■□□□□ 0.15
CHRNA1P02708 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CHRNA1P02708 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.97■□□□□ 0.15
CHRNA1P02708 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms