Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.72□□□□□ -0.37
SDCBPO00560 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
SDCBPO00560 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
SDCBPO00560 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 AC018665.1-201ENST00000622927 1362 ntBASIC12.71□□□□□ -0.37
SDCBPO00560 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 AL360270.3-201ENST00000609118 1348 ntBASIC12.71□□□□□ -0.37
SDCBPO00560 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 AC004890.2-204ENST00000481968 304 ntBASIC12.71□□□□□ -0.37
SDCBPO00560 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 SRD5A3P1-201ENST00000603021 949 ntBASIC12.71□□□□□ -0.37
SDCBPO00560 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 AC008738.7-201ENST00000609744 511 ntBASIC12.71□□□□□ -0.37
SDCBPO00560 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.71□□□□□ -0.37
SDCBPO00560 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
SDCBPO00560 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
SDCBPO00560 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.71□□□□□ -0.37
SDCBPO00560 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
SDCBPO00560 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.71□□□□□ -0.38
SDCBPO00560 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.71□□□□□ -0.38
SDCBPO00560 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
SDCBPO00560 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.71□□□□□ -0.38
SDCBPO00560 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.7□□□□□ -0.38
SDCBPO00560 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
SDCBPO00560 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.7□□□□□ -0.38
SDCBPO00560 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.7□□□□□ -0.38
SDCBPO00560 SPDYE18-201ENST00000510091 1050 ntBASIC12.7□□□□□ -0.38
SDCBPO00560 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms