Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00244-201ENST00000625073 613 ntBASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
SMC1BQ8NDV3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 AC073869.2-201ENST00000417338 1026 ntBASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 AC092862.1-201ENST00000541534 533 ntBASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 AL160191.2-201ENST00000603975 601 ntBASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SMC1BQ8NDV3 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 AL137783.1-201ENST00000623494 1896 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 AC012508.2-201ENST00000567613 1472 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 DKKL1P1-201ENST00000400550 698 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 AC053503.3-201ENST00000448375 114 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 BCRP4-201ENST00000506079 804 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 KNOP1P1-201ENST00000542108 989 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 SIGLEC22P-201ENST00000599104 714 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 AP000769.1-203ENST00000637245 208 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 AC006372.4-201ENST00000624122 1543 ntBASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.4■□□□□ 0.38
SMC1BQ8NDV3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SMC1BQ8NDV3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SMC1BQ8NDV3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
SMC1BQ8NDV3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms